PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Cucsa.321840.1
Common NameCsa_3G011620, LOC101205372
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Benincaseae; Cucumis
Family bHLH
Protein Properties Length: 471aa    MW: 51181.3 Da    PI: 7.7635
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Cucsa.321840.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH39.97.4e-13286331454
                     HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS
             HLH   4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 
                     +h e+Er+RR+++N++f  Lr ++P+       K++Ka+ L  Av YI++L
  Cucsa.321840.1 286 NHVEAERQRREKLNQKFYALRAVVPNV-----SKMDKASLLGDAVSYINEL 331
                     799***********************6.....5***************998 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF142152.2E-2258211IPR025610Transcription factor MYC/MYB N-terminal
PROSITE profilePS5088817.161282331IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000831.17E-14285336No hitNo description
SuperFamilySSF474594.71E-18285351IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000102.1E-10286331IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.101.6E-17286352IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003539.5E-17288337IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 471 aa     Download sequence    Send to blast
NASVMDAFMN SDLSSYWAPS AASSHSLHHP PPPQSSASTS TPPPDAPKSL PVFNQETLQQ  60
RLQALIDGAR ESWTYAIFWQ SSYDYSGGSV LGWGDGYYKG EEDKGKGKAK MVSSAAEQAH  120
RKKVLRELNS LISGSAAGPD DAVDEESQSF LNFSDYGFES NPTKNTTATA TATTSTTPSF  180
KPESGGMLNF GNGSLFSGHS QYVTNEQNEK KRSPASRSSN DEGILSFTSG VILPSSGKVK  240
SGDSDHSDLE ASAIREVDSC TKSLEPEKRP RKRGRKPANG REEPLNHVEA ERQRREKLNQ  300
KFYALRAVVP NVSKMDKASL LGDAVSYINE LKSKLQMAES EKTDMGKHLE LLKKEMGGKD  360
LGCYSNPNDE DLKTGKRKVM DMEIEVKIMG WDAMIRIQSN KKNHPAARLM TAFKDLDLEM  420
LHASVSVVND LMIQQATVKM GSRFYTQEQL KMALVARVGG GGSGGGGGIM *
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4yz6_A3e-26511522118Transcription factor MYC3
4rs9_A3e-26511522118Transcription factor MYC3
4rqw_B3e-26511522118Transcription factor MYC3
4rqw_A3e-26511522118Transcription factor MYC3
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1267275KRPRKRGRK
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankLN6818600.0LN681860.1 Cucumis melo genomic scaffold, anchoredscaffold00021.
GenBankLN7132600.0LN713260.1 Cucumis melo genomic chromosome, chr_6.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004148739.10.0PREDICTED: transcription factor MYC2-like
SwissprotO496871e-103MYC4_ARATH; Transcription factor MYC4
TrEMBLA0A0A0L3Z00.0A0A0A0L3Z0_CUCSA; Transcription factor AtMYC2
STRINGSolyc08g005050.2.11e-139(Solanum lycopersicum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF29383364
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G17880.12e-90bHLH family protein
Publications ? help Back to Top
  1. Ren Y, et al.
    An integrated genetic and cytogenetic map of the cucumber genome.
    PLoS ONE, 2009. 4(6): p. e5795
    [PMID:19495411]
  2. Guo S, et al.
    Transcriptome sequencing and comparative analysis of cucumber flowers with different sex types.
    BMC Genomics, 2010. 11: p. 384
    [PMID:20565788]
  3. Li Z, et al.
    RNA-Seq improves annotation of protein-coding genes in the cucumber genome.
    BMC Genomics, 2011. 12: p. 540
    [PMID:22047402]