PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

Plant Transcription Factor Database

v4.0

Previous version: v3.0

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Cucsa.321840.1

Common Name

Csa_3G011620, LOC101205372

Organism

Cucumis sativus

Taxonomic ID

3659

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Benincaseae; Cucumis

Family

bHLH

Protein Properties

Length: 471aa MW: 51181.3 Da PI: 7.7635

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Cucsa.321840.1	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	39.9	7.4e-13	286	331	4	54
HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS HLH 4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 +h e+Er+RR+++N++f Lr ++P+ K++Ka+ L Av YI++L Cucsa.321840.1 286 NHVEAERQRREKLNQKFYALRAVVPNV-----SKMDKASLLGDAVSYINEL 331 799*********************6.....5*************998 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF14215	2.2E-22	58	211	IPR025610	Transcription factor MYC/MYB N-terminal
PROSITE profile	PS50888	17.161	282	331	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
CDD	cd00083	1.17E-14	285	336	No hit	No description
SuperFamily	SSF47459	4.71E-18	285	351	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Pfam	PF00010	2.1E-10	286	331	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Gene3D	G3DSA:4.10.280.10	1.6E-17	286	352	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
SMART	SM00353	9.5E-17	288	337	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 471 aa Download sequence Send to blast
NASVMDAFMN SDLSSYWAPS AASSHSLHHP PPPQSSASTS TPPPDAPKSL PVFNQETLQQ 60 RLQALIDGAR ESWTYAIFWQ SSYDYSGGSV LGWGDGYYKG EEDKGKGKAK MVSSAAEQAH 120 RKKVLRELNS LISGSAAGPD DAVDEESQSF LNFSDYGFES NPTKNTTATA TATTSTTPSF 180 KPESGGMLNF GNGSLFSGHS QYVTNEQNEK KRSPASRSSN DEGILSFTSG VILPSSGKVK 240 SGDSDHSDLE ASAIREVDSC TKSLEPEKRP RKRGRKPANG REEPLNHVEA ERQRREKLNQ 300 KFYALRAVVP NVSKMDKASL LGDAVSYINE LKSKLQMAES EKTDMGKHLE LLKKEMGGKD 360 LGCYSNPNDE DLKTGKRKVM DMEIEVKIMG WDAMIRIQSN KKNHPAARLM TAFKDLDLEM 420 LHASVSVVND LMIQQATVKM GSRFYTQEQL KMALVARVGG GGSGGGGGIM *

Sequence ? help Back to Top

Protein Sequence Length: 471 aa Download sequence Send to blast

NASVMDAFMN SDLSSYWAPS AASSHSLHHP PPPQSSASTS TPPPDAPKSL PVFNQETLQQ  60
RLQALIDGAR ESWTYAIFWQ SSYDYSGGSV LGWGDGYYKG EEDKGKGKAK MVSSAAEQAH  120
RKKVLRELNS LISGSAAGPD DAVDEESQSF LNFSDYGFES NPTKNTTATA TATTSTTPSF  180
KPESGGMLNF GNGSLFSGHS QYVTNEQNEK KRSPASRSSN DEGILSFTSG VILPSSGKVK  240
SGDSDHSDLE ASAIREVDSC TKSLEPEKRP RKRGRKPANG REEPLNHVEA ERQRREKLNQ  300
KFYALRAVVP NVSKMDKASL LGDAVSYINE LKSKLQMAES EKTDMGKHLE LLKKEMGGKD  360
LGCYSNPNDE DLKTGKRKVM DMEIEVKIMG WDAMIRIQSN KKNHPAARLM TAFKDLDLEM  420
LHASVSVVND LMIQQATVKM GSRFYTQEQL KMALVARVGG GGSGGGGGIM *

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
4yz6_A	3e-26	51	152	2	118	Transcription factor MYC3
4rs9_A	3e-26	51	152	2	118	Transcription factor MYC3
4rqw_B	3e-26	51	152	2	118	Transcription factor MYC3
4rqw_A	3e-26	51	152	2	118	Transcription factor MYC3
Search in ModeBase

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	267	275	KRPRKRGRK

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	LN681860	0.0	LN681860.1 Cucumis melo genomic scaffold, anchoredscaffold00021.
GenBank	LN713260	0.0	LN713260.1 Cucumis melo genomic chromosome, chr_6.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_004148739.1	0.0	PREDICTED: transcription factor MYC2-like
Swissprot	O49687	1e-103	MYC4_ARATH; Transcription factor MYC4
TrEMBL	A0A0A0L3Z0	0.0	A0A0A0L3Z0_CUCSA; Transcription factor AtMYC2
STRING	Solyc08g005050.2.1	1e-139	(Solanum lycopersicum)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF2938	33	64

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G17880.1	2e-90	bHLH family protein

Link Out ? help Back to Top
Phytozome	Cucsa.321840.1
Entrez Gene	101205372

Publications ? help Back to Top
Ren Y, et al. An integrated genetic and cytogenetic map of the cucumber genome. PLoS ONE, 2009. 4(6): p. e5795 [PMID:19495411] Guo S, et al. Transcriptome sequencing and comparative analysis of cucumber flowers with different sex types. BMC Genomics, 2010. 11: p. 384 [PMID:20565788] Li Z, et al. RNA-Seq improves annotation of protein-coding genes in the cucumber genome. BMC Genomics, 2011. 12: p. 540 [PMID:22047402]